Nano-LC-MS/MS

Gacek-Matthews, A.; Berger, H.; Sasaki, T.; Wittstein, K.; Gruber, C.; Lewis, ZA; Strauss, J. (2016) KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans. PLoS Genet. 2016 Aug 22;12(8):e1006222, doi: 10.1371/journal.pgen.1006222

Hofbauer, S.; Mlynek, G.; Milazzo, L.; Pühringer, D.; Maresch, D.; Schaffner, I.; Furtmüller, PG; Smulevich, G.; Djinović-Carugo, K.; Obinger, C. (2016) Hydrogen peroxide-mediated conversion of coproheme to heme b by HemQ-lessons from the first crystal structure and kinetic studies. FEBS J. 2016 Dec;283(23):4386-4401. doi: 10.1111/febs.13930.

Paireder, M.; Mehofer, U.; Tholen, S.; Porodko, A.; Schähs, P.; Maresch, D.; Biniossek, ML; van der Hoorn, RA; Lenarcic, B.; Novinec, M.; Schilling, O.; Mach, L. (2016) The death enzyme CP14 is a unique papain-like cysteine proteinase with a pronounced S2 subsite selectivity. Arch Biochem Biophys. 2016 Aug 1;603:110-7. doi: 10.1016/j.abb.2016.05.017.

Altmann, F.; Kosma, P.; O’Callaghan, A.; Leahy, S.; Bottacini, F.; Molloy, E.; Plattner, S.; Schiavi, E.; Gleinser, M.; Groeger, D.; Grant, R.; Rodriguez Perez, N.; Healy, S.; Svehla, E.; Windwarder, M.; Hofinger, A.; O’Connell Motherway, M.; Akdis, CA; Xu, J.; Roper, J.; van Sinderen, D.; O’Mahony, L. (2016) Genome Analysis and Characterisation of the Exopolysaccharide Produced by Bifidobacterium longum subsp. longum 35624™. PLoS One 11, e0162983. doi: 10.1371/journal.pone.0162983.

Dicker, M.; Tschofen, M.; Maresch, D.; König, J.; Juarez, P.; Orzaez, D.; Altmann, F.; Steinkellner, H.; Strasser, R. (2016) Transient Glyco-Engineering to Produce Recombinant IgA1 with Defined N- and O-Glycans in Plants. Front Plant Sci.7, 18. doi: 10.3389/fpls.2016.00018.

Gludovacz, E.; Maresch, D.; Bonta, M.; Szöllösi, H.; Furtmüller, PG; Weik, R.; Altmann, F.; Limbeck, A.; Borth, N.; Jilma, B.; Boehm, T. (2016) Characterization of recombinant human diamine oxidase (rhDAO) produced in Chinese Hamster Ovary (CHO) cells. J Biotechnol. 227, 120-130. doi: 10.1016/j.jbiotec.2016.04.002.

Maresch, D.; Altmann, F. (2016) Isotype-specific glycosylation analysis of mouse immunoglobulin G by liquid chromatography-mass spectrometry. Proteomics. 16, 1321-1330. doi: 10.1002/pmic.201500367.

van Teeseling, MC; Maresch, D.; Rath, CB; Figl, R.; Altmann, F.; Jetten, MS; Messner, P.; Schäffer, C.; van Niftrik, L. (2016) The S-Layer Protein of the Anammox Bacterium Kuenenia stuttgartiensis Is Heavily O-Glycosylated. Front Microbiol 1, 7   10.3389/fmicb.2016.01721

Cell Sorter

Feichtinger J., Hernandez I., Fischer C., Hanscho M., Auer N., Hackl M., Jadhav V., Baumann M., Krempl P.M., Schmidl C., Farlik M., Schuster M., Merkel A., Sommer A., Heath S., Rico D., Bock C., Thallinger G.G., Borth N. (2016) Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time. Biotechn. Bioeng. 113:10:2241-2253. DOI: 10.1002/bit.25990

Gludovacz E., Maresch D., Bonta M., Szöllösi H., Furtmüller P.G., Weik R., Altmann F., Limbeck A., Borth N., Jilma B., Boehm T. (2016) Characterization of recombinant human diamine oxidase (rhDAO) produced in Chinese Hamster Ovary cells. J Biotechnol. 227, 120-130

Klanert G., Jadhav V., Shanmukam V., Diendorfer A.m Karbiener M., Scheideler M., Bort JH., Grillari J., Hackl M., Borth N. (2016) A signature of 12 microRNAs is robustly associated with growth rate in a variety of CHO cell lines. J Biotechnol. DOI 10.1016/j.jiotec.2016.03.022

Priola J.J., Calzadilla N., Baumann M., Borth N., Tate C.G., Betenbaugh M.J. (2016) High-throughput screening and selection of mammalian cells for protein production and crystallization. Biotechnol. J. 11:7:853-865

Swainston N., Smallbone K., Hefzi H., Dobson P.D., Brewer J., Hanscho M., Zielinski D.C., Ang K.S., Gardiner N.J., Gutierrez J.H., Kyriakopoulos S., Lakshmanan M., Li S., Liu J.K., Martínez V.S., Orellana C.A., Quek LE., Thomas A., Zanghellini J., Borth N., Lee DY., Nielsen L.K., Kell D.B., Lewis N.E., Mendes P. (2016) Recon 2.2: from reconstruction to model of human metabolism. Metabolomics, 12:7:109

Bartko J., Gludovacz E., Petroczi K., Borth N., Jilma B., Boehm T. (2016) Recombinant human diamine oxidase activity is not inhibited by ethanol, acetaldehyde, disulfiram, diethyldithiocarbamate or cyanamide. Alcohol, 54:51-59

Hefzi H., Ang KS, Hanscho M., Bordbar A., Ruckerbauer D., Lakshmanan M., Orellana CA, Baycin-Hizal D., Huang Y., Ley D., Martinez VS, Kyriakopoulos S., Jiménez NE, Zielinski DC, Quek LE, Wulff T., Arnsdorf J., Li S., Lee JS, Paglia G., Loira N., Spahn PN, Pedersen LE, Gutierrez JM, King ZA, Lund AM, Nagarajan H., Thomas A., Abdel-Haleem AM, Zanghellini J., Kildegaard HF, Voldborg BG, Gerdtzen ZP, Betenbaugh MJ, Palsson BO, Andersen MR, Nielsen LK, Borth N., Lee DY, Lewis NE (2016) A consensus genome scale reconstruction of Chinese Hamster Ovary cell metabolism. Cell Systems 23; 3(5):434-443.e8

Sequenzer

Poyntner C., Blasi B., Arcalis E., Mirastschijski U., Sterflinger K., Tafer H. (2016) The Transcriptome of Exophiala dermatitidis during Ex-vivo Skin Model Infection. Frontiers in Cellular and Infection Microbiology 10/2016; 6., DOI:10.3389/fcimb.2016.00136

Lopandic K., Pfliegler WP., Tiefenbrunner W., Gangl H., Sipiczki M., Sterflinger K. (2016) Genotypic and phenotypic evolution of yeast interspecies hybrids during high-sugar fermentation. Applied Microbiology and Biotechnology 04/2016; 100(14):6331-6343., DOI:10.1007/s00253-016-7481-0

Blasi B., Poyntner C., Rudavsky T., Prenafeta-Boldú FX., de Hoog S., Tafer H., Sterflinger K. (2016) Pathogenic Yet Environmentally Friendly? Black Fungal Candidates for Bioremediation of Pollutants. Geomicrobiology 02/2016; 33(3-4):308-317., DOI:10.1080/01490451.2015.1052118

Tafer H., Sterflinger K., Lopandic K. (2016) Draft Genome of Debaryomyces fabryi CBS 789 T , Isolated from a Human Interdigital Mycotic Lesion. Genome Announcements 02/2016; 4(1):e01580-15., DOI:10.1128/genomeA.01580-15

Pinar G., Dalnodar D., Voitl C., Reschreiter H., Sterflinger K. (2016) Biodeterioration Risk Threatens the 3100 Year Old Staircase of Hallstatt (Austria): Possible Involvement of Halophilic Microorganisms. PLoS ONE 02/2016; 11(2)., DOI:10.1371/journal.pone.0148279

Bioreactor

Bellasio, M; Peymann, A; Steiger, MG; Valli, M; Sipiczki, M; Sauer, M; Graf, AB; Marx, H; Mattanovich, D. (2016) Complete genome sequence and transcriptome regulation of the pentose utilizing yeast Sugiyamaella lignohabitans. FEMS YEAST RES. 16(4); DOI: 10.1093/femsyr/fow037

Landes, N; Gasser, B; Vorauer-Uhl, K; Lhota, G; Mattanovich, D; Maurer, M; (2016) The vitamin-sensitive promoter PTHI11 enables pre-defined autonomous induction of recombinant protein production in Pichia pastoris. Biotechnol Bioeng. 113(12):2633-2643; DOI:10.1002/bit.26041

Nocon, J; Steiger, M; Mairinger, T; Hohlweg, J; Rußmayer, H; Hann, S; Gasser, B; Mattanovich, D (2016) Increasing pentose phosphate pathway flux enhances recombinant protein production in Pichia pastoris. Appl Microbiol Biotechnol. 100(13):5955-5963; DOI: 10.1007/s00253-016-7363-5

Rebnegger, C; Vos, T; Graf, AB; Valli, M; Pronk, JT; Daran-Lapujade, P; Mattanovich, D; (2016) Pichia pastoris Exhibits High Viability and a Low Maintenance Energy Requirement at Near-Zero Specific Growth Rates. Appl Environ Microbiol. 82(15):4570-4583; DOI: 10.1128/AEM.00638-16

Gravimeter / Calorimeter

Kurzhals, S.; Zirbs, R.; Reimhult, E. (2015) Synthesis and magneto-thermal actuation of iron oxide core – PNIPAM shell nanoparticles, ACS Applied Materials & Interfaces, 7, 19342-19352, DOI: 10.1021/acsami.5b05459

Bixner, O.; Lassenberger, A.; Baurecht, D.; Reimhult, E. (2015) Complete exchange of hydrophobic dispersant shell on superpara-magnetic iron oxide nanoparticles, Langmuir, 31, 9198-9204, DOI: 10.1021/acs.langmuir.5b01833

Grünewald, T.A.; van Oostrum, P.D.J.; Lassenberger, A.; Zirbs, R.; Capone, B.; Vonderhaid, I.; Amenitsch, H.; Lichtenegger, H.C.; Reimhult, E. (2015) Core-shell structure of monodisperse PEG-grafted iron oxide nanoparticles studied by SAXS, Chemistry of Materials, 27, 4763-4771, DOI: 10.1021/acs.chemmater.5b01488

Zirbs, R.; Lassenberger, A.; Vonderhaid, I.; Kurzhals, S.; Reimhult, E. (2015) Melt-Grafting for the Synthesis of Core-Shell Nanoparticles with Ultra-High Dispersant Density, Nanoscale, 7, 11216-11225, DOI: 10.1039/C5NR02313K