2016

Publications Cellular Analysis

Causon, TJ.; Dosen, M.; Reznicek, G.; Hann, S. (2016) Workflow development for the analysis of phenolic compounds in wine using liquid chromatography combined with drift-tube ion mobility-mass spectrometry, LCGC North America, 34(11), 854-867.

Jungreuthmayer, C.; Neubauer, S.; Mairinger, T.; Zanghellini, J.; Hann, S. (2016) ICT: isotope correction toolbox, Bioinformatics 32(1), 154-156.

Causon, T. J.; Hann, S. (2016) Review of sample preparation strategies for MS-based metabolomic studies in industrial biotechnology, Analytica Chimica Acta, 938, 18-32.

Ortmayr, K.; Causon, T. J.; Hann, S.; Koellensperger, G. (2016) Increasing selectivity and coverage in LC-MS based metabolome analysis, TrAC, Trends in Analytical Chemistry, 82, 358-366.

Koellensperger, G.; Galanski, M.; Keppler, B.K.; Hann, S. (2016) Turbulent flow chromatography in combination with HPLC-ICP-MS for high-throughput analysis of free, intact metal based drugs in biomedical samples, Journal of Analytical Atomic Spectrometry, 31(9), 1811-1817.

Oburger, E.; Gruber, B.; Wanek, W.; Watzinger, A.; Stanetty, C.; Schindlegger, Y.; Hann, S.; Schenkeveld, W. D. C.; Kraemer, S.M.; Puschenreiter, M. (2016) Microbial decomposition of 13C-labeled phytosiderophores in the rhizosphere of wheat: Mineralization dynamics and key microbial groups involved, Soil Biology & Biochemistry, 98, 196-207.

Nocon, J.; Steiger, M.; Mairinger, T.; Hohlweg, J.; Russmayer, H.; Hann, S.; Gasser, B.; Mattanovich, D. (2016) Increasing pentose phosphate pathway flux enhances recombinant protein production in Pichia pastoris, Applied Microbiology and Biotechnology, 100(13), 5955-5963.

Feichtinger J., Hernandez I., Fischer C., Hanscho M., Auer N., Hackl M., Jadhav V., Baumann M., Krempl P.M., Schmidl C., Farlik M., Schuster M., Merkel A., Sommer A., Heath S., Rico D., Bock C., Thallinger G.G., Borth N. (2016) Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time. Biotechn. Bioeng. 113:10:2241-2253. DOI: 10.1002/bit.25990

Gludovacz E., Maresch D., Bonta M., Szöllösi H., Furtmüller P.G., Weik R., Altmann F., Limbeck A., Borth N., Jilma B., Boehm T. (2016) Characterization of recombinant human diamine oxidase (rhDAO) produced in Chinese Hamster Ovary cells. J Biotechnol. 227, 120-130

Klanert G., Jadhav V., Shanmukam V., Diendorfer A.m Karbiener M., Scheideler M., Bort JH., Grillari J., Hackl M., Borth N. (2016) A signature of 12 microRNAs is robustly associated with growth rate in a variety of CHO cell lines. J Biotechnol. DOI 10.1016/j.jiotec.2016.03.022

Priola J.J., Calzadilla N., Baumann M., Borth N., Tate C.G., Betenbaugh M.J. (2016) High-throughput screening and selection of mammalian cells for protein production and crystallization. Biotechnol. J. 11:7:853-865

Swainston N., Smallbone K., Hefzi H., Dobson P.D., Brewer J., Hanscho M., Zielinski D.C., Ang K.S., Gardiner N.J., Gutierrez J.H., Kyriakopoulos S., Lakshmanan M., Li S., Liu J.K., Martínez V.S., Orellana C.A., Quek LE., Thomas A., Zanghellini J., Borth N., Lee DY., Nielsen L.K., Kell D.B., Lewis N.E., Mendes P. (2016) Recon 2.2: from reconstruction to model of human metabolism. Metabolomics, 12:7:109

Bartko J., Gludovacz E., Petroczi K., Borth N., Jilma B., Boehm T. (2016) Recombinant human diamine oxidase activity is not inhibited by ethanol, acetaldehyde, disulfiram, diethyldithiocarbamate or cyanamide. Alcohol, 54:51-59

Hefzi H., Ang KS, Hanscho M., Bordbar A., Ruckerbauer D., Lakshmanan M., Orellana CA, Baycin-Hizal D., Huang Y., Ley D., Martinez VS, Kyriakopoulos S., Jiménez NE, Zielinski DC, Quek LE, Wulff T., Arnsdorf J., Li S., Lee JS, Paglia G., Loira N., Spahn PN, Pedersen LE, Gutierrez JM, King ZA, Lund AM, Nagarajan H., Thomas A., Abdel-Haleem AM, Zanghellini J., Kildegaard HF, Voldborg BG, Gerdtzen ZP, Betenbaugh MJ, Palsson BO, Andersen MR, Nielsen LK, Borth N., Lee DY, Lewis NE (2016) A consensus genome scale reconstruction of Chinese Hamster Ovary cell metabolism. Cell Systems 23; 3(5):434-443.e8

Gacek-Matthews, A.; Berger, H.; Sasaki, T.; Wittstein, K.; Gruber, C.; Lewis, ZA; Strauss, J. (2016) KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans. PLoS Genet. 2016 Aug 22;12(8):e1006222, doi: 10.1371/journal.pgen.1006222

Hofbauer, S.; Mlynek, G.; Milazzo, L.; Pühringer, D.; Maresch, D.; Schaffner, I.; Furtmüller, PG; Smulevich, G.; Djinović-Carugo, K.; Obinger, C. (2016) Hydrogen peroxide-mediated conversion of coproheme to heme b by HemQ-lessons from the first crystal structure and kinetic studies. FEBS J. 2016 Dec;283(23):4386-4401. doi: 10.1111/febs.13930.

Paireder, M.; Mehofer, U.; Tholen, S.; Porodko, A.; Schähs, P.; Maresch, D.; Biniossek, ML; van der Hoorn, RA; Lenarcic, B.; Novinec, M.; Schilling, O.; Mach, L. (2016) The death enzyme CP14 is a unique papain-like cysteine proteinase with a pronounced S2 subsite selectivity. Arch Biochem Biophys. 2016 Aug 1;603:110-7. doi: 10.1016/j.abb.2016.05.017.

Altmann, F.; Kosma, P.; O’Callaghan, A.; Leahy, S.; Bottacini, F.; Molloy, E.; Plattner, S.; Schiavi, E.; Gleinser, M.; Groeger, D.; Grant, R.; Rodriguez Perez, N.; Healy, S.; Svehla, E.; Windwarder, M.; Hofinger, A.; O’Connell Motherway, M.; Akdis, CA; Xu, J.; Roper, J.; van Sinderen, D.; O’Mahony, L. (2016) Genome Analysis and Characterisation of the Exopolysaccharide Produced by Bifidobacterium longum subsp. longum 35624™. PLoS One 11, e0162983. doi: 10.1371/journal.pone.0162983.

Dicker, M.; Tschofen, M.; Maresch, D.; König, J.; Juarez, P.; Orzaez, D.; Altmann, F.; Steinkellner, H.; Strasser, R. (2016) Transient Glyco-Engineering to Produce Recombinant IgA1 with Defined N- and O-Glycans in Plants. Front Plant Sci.7, 18. doi: 10.3389/fpls.2016.00018.

Gludovacz, E.; Maresch, D.; Bonta, M.; Szöllösi, H.; Furtmüller, PG; Weik, R.; Altmann, F.; Limbeck, A.; Borth, N.; Jilma, B.; Boehm, T. (2016) Characterization of recombinant human diamine oxidase (rhDAO) produced in Chinese Hamster Ovary (CHO) cells. J Biotechnol. 227, 120-130. doi: 10.1016/j.jbiotec.2016.04.002.

Maresch, D.; Altmann, F. (2016) Isotype-specific glycosylation analysis of mouse immunoglobulin G by liquid chromatography-mass spectrometry. Proteomics. 16, 1321-1330. doi: 10.1002/pmic.201500367.

van Teeseling, MC; Maresch, D.; Rath, CB; Figl, R.; Altmann, F.; Jetten, MS; Messner, P.; Schäffer, C.; van Niftrik, L. (2016) The S-Layer Protein of the Anammox Bacterium Kuenenia stuttgartiensis Is Heavily O-Glycosylated. Front Microbiol 1, 7   10.3389/fmicb.2016.01721

 

Publications Extremophile Center

Poyntner C., Blasi B., Arcalis E., Mirastschijski U., Sterflinger K., Tafer H. (2016) The Transcriptome of Exophiala dermatitidis during Ex-vivo Skin Model Infection. Frontiers in Cellular and Infection Microbiology 10/2016; 6., DOI:10.3389/fcimb.2016.00136

Lopandic K., Pfliegler WP., Tiefenbrunner W., Gangl H., Sipiczki M., Sterflinger K. (2016) Genotypic and phenotypic evolution of yeast interspecies hybrids during high-sugar fermentation. Applied Microbiology and Biotechnology 04/2016; 100(14):6331-6343., DOI:10.1007/s00253-016-7481-0

Blasi B., Poyntner C., Rudavsky T., Prenafeta-Boldú FX., de Hoog S., Tafer H., Sterflinger K. (2016) Pathogenic Yet Environmentally Friendly? Black Fungal Candidates for Bioremediation of Pollutants. Geomicrobiology 02/2016; 33(3-4):308-317., DOI:10.1080/01490451.2015.1052118

Tafer H., Sterflinger K., Lopandic K. (2016) Draft Genome of Debaryomyces fabryi CBS 789 T , Isolated from a Human Interdigital Mycotic Lesion. Genome Announcements 02/2016; 4(1):e01580-15., DOI:10.1128/genomeA.01580-15

Pinar G., Dalnodar D., Voitl C., Reschreiter H., Sterflinger K. (2016) Biodeterioration Risk Threatens the 3100 Year Old Staircase of Hallstatt (Austria): Possible Involvement of Halophilic Microorganisms. PLoS ONE 02/2016; 11(2)., DOI:10.1371/journal.pone.0148279

Bellasio, M; Peymann, A; Steiger, MG; Valli, M; Sipiczki, M; Sauer, M; Graf, AB; Marx, H; Mattanovich, D. (2016) Complete genome sequence and transcriptome regulation of the pentose utilizing yeast Sugiyamaella lignohabitans. FEMS YEAST RES. 16(4); DOI: 10.1093/femsyr/fow037

Landes, N; Gasser, B; Vorauer-Uhl, K; Lhota, G; Mattanovich, D; Maurer, M; (2016) The vitamin-sensitive promoter PTHI11 enables pre-defined autonomous induction of recombinant protein production in Pichia pastoris. Biotechnol Bioeng. 113(12):2633-2643; DOI:10.1002/bit.26041

Nocon, J; Steiger, M; Mairinger, T; Hohlweg, J; Rußmayer, H; Hann, S; Gasser, B; Mattanovich, D (2016) Increasing pentose phosphate pathway flux enhances recombinant protein production in Pichia pastoris. Appl Microbiol Biotechnol. 100(13):5955-5963; DOI: 10.1007/s00253-016-7363-5

Rebnegger, C; Vos, T; Graf, AB; Valli, M; Pronk, JT; Daran-Lapujade, P; Mattanovich, D; (2016) Pichia pastoris Exhibits High Viability and a Low Maintenance Energy Requirement at Near-Zero Specific Growth Rates. Appl Environ Microbiol. 82(15):4570-4583; DOI: 10.1128/AEM.00638-16

Bixner, O.; Bello, G.; Mumtaz Virk, M.; Kurzhals, S.; Scheberl, A.; Gal, N.; Matysik, A.; Kraut R. and Reimhult, E. (2016) Magneto-thermal release from nanoscale unilamellar hybrid vesicles, ChemNanoMat, 2, 1111-1120, DOI: 10.1002/cnma.201600278

Lundgren, A.; Agnarsson, B.; Zirbs, R.; Zhdanov, V.P.; Reimhult E. and Höök, F. (2016) Nonspecific Colloidal-Type Interaction Explains Size-Dependent Specific Binding of Membrane-Targeted Nanoparticles, ACS Nano, 10, 9974-9982, DOI: 10.1021/acsnano.6b04160

Lassenberger, A.; Bixner, O.; Gruenewald, T.; Lichtenegger, H.; Zirbs, R.; Reimhult, E. (2016) Evaluation of high-yield purification methods on monodisperse PEG-grafted iron oxide nanoparticles, Langmuir, 32, 4259-4269, DOI: 10.1021/acs.langmuir.6b00919

Bixner, O.; Kurzhals, S.; Virk, M. and Reimhult, E. (2016) Triggered Release from Thermoresponsive Polymersomes with Superparamagnetic Membranes, Materials, 9, 29, DOI: 10.3390/ma9010029

Bixner, O. and Reimhult, E. (2016) Controlled magnetosomes: Embedding of magnetic nanoparticles into membranes of monodisperse lipid vesicles, Journal of Colloid and Interface Science, 466, 62-71 DOI: 10.1016/j.jcis.2015.11.071

 

Publications Responsible River Modelling Center

Gmeiner, P. et al (2017): Direct shear stress measurements in a rough bed open channel flow with low relative submergence. In Water Resources Research. (In prep)

Lichtneger, P., Sindelar, C., Habersack, H. (2016): Experimental investigation on local shear stress and turbulence intensity over a rough bed with and without sediment using Laser Doppler Anemometry and Particle Image Velocimetry. [The 13th International Symposium on River Sedimentation (ISRS 2016), Stuttgart, Germany, Sep 19-22, 2016] In: Wieprecht et al. (Eds.), River Sedimentation, © 2017 Taylor & Francis Group, London; ISBN: 978-1-138-02945-3

Lichtneger, P., Sindelar, C., Habersack, H. Kitzhofer, J., Prager, E. (2016) Experimental investigation on local shear stress and turbulence intensity over a rough bed with and without sediment. In. International Journal of Sediment Research, Special Issue from the ISRS 2016, (under review)

Lichtneger, P., Sindelar, C.; Habersack, H.; Mayer, G.; Struska, N.; Albrecht, W.; Lechner, C. (2016): Field Tests to Determine The Hydraulic Performance of The First Installation of The Double Rotating Hydropower Screw with Integrated Fish Lift., 19th International Seminar on Hydropower Plants.

Lichtneger, P., Sindelar, C.; Habersack, H.; Mayer, G.; Struska, N.; Albrecht, W. (2016): Field Tests to Determine The Hydraulic Performance of The First Installation of The Double Rotating Hydropower Screw with Integrated Fish Lift. In 23th International Conference on Hydropower HYDROTURBO 2016, abstract proceedings.

Pfeiffer, D., Stehrer, D. (2016): Erfassung und Analyse von Geschwindigkeitsprofilen mittels Vielpunktmessung im Forschungsgerinne Nussdorf, Bachelorarbeit, BOKU.

Schmalzer, B. (2016): Ökohydraulische Analysen und Bewertungen des Inns in Bezug auf Feinsedimenteintrag und –ablagerung am Fallbeispiel Gepatsch. Masterarbeit, BOKU.

Villalobos J.F.C. (2016): Validation of a numerical vegetation bending model in a Research Channel Facility, Master thesis, BOKU.

Waygand, M., Klösch, M., Buchinger, M., Tritthart, M., Baur, P., Egger, G., Pfemeter, M., Sindelar, C. and Habersack, H. (2017): Parameterization of shrubby riparian vegetation for mechanically based modelling of plant deformation in flowing water. In. Geophysical Research Abstracts, Vol. 19, EGU2017-18876, 2017, EGU General Assembly 2017 (submitted)

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