Publications Cellular Analysis

Mairinger T, Tröndle J, Hanscho M, Hann S. (2017) On-line clean-up and LC-MS analysis of primary metabolites in cell culture supernatants. Anal Methods 2017; 9(38):5703-10.

Stow SM, Causon TJ, Zheng X, Kurulugama RT, Mairinger T, May JC, Rennie EE, Baker ES, Smith RD, McLean JA, Hann S, Fjeldsted JC (2017). An interlaboratory evaluation of drift tube ion mobility-mass spectrometry collision cross section measurements. Anal Chem 2017; 89(17):9048-55.

Si-Hung L, Causon TJ, Hann S. (2017) Comparison of fully wettable RPLC stationary phases for LC-MS-based cellular metabolomics. Electrophoresis, 2017; 38(18):2287-95.

Rathgeb A, Causon T, Krachler R, Hann S. (2017) From the peat bog to the estuarine mixing zone: Common features and variances in riverine dissolved organic matter determined by non-targeted analysis. Mar Chem 2017; 194:158-67.

Mairinger T, Hann S. Implementation of data-dependent isotopologue fragmentation in13C-based metabolic flux analysis. Anal Bioanal Chem 2017; 409(15):3713-8.

Mattanovich M, Russmayer H, Scharl-Hirsch T, Puxbaum V, Burgard J, Mattanovich D, Hann S. (2017) Metabolomics of pichia pastoris: Impact of buffering conditions on the kinetics and nature of metabolite loss during quenching. FEMS Yeast Res 2017; 17(3).

Rugova A, Puschenreiter M, Koellensperger G, Hann S. (2017) Elucidating rhizosphere processes by mass spectrometry – A review. Anal Chim Acta 2017; 956:1-13.

Ortmayr K, Charwat V, Kasper C, Hann S, Koellensperger G.(2017) Uncertainty budgeting in fold change determination and implications for non-targeted metabolomics studies in model systems. Analyst 2017; 142(1):80-90.

Metz TO, Baker ES, Schymanski EL, Renslow RS, Thomas DG, Causon TJ, Webb IK, Hann S, Smith RD, Teeguarden JG. (2017) Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: What can it add and how far can it go? Bioanalysis 2017; 9(1):81-98.

Bönisch M, Sellmann C, Maresch D, Halbig C, Becker S, Toleikis L, Hock B, Rüker F (2017) Novel CH1: CL interfaces that enhance correct light chain pairing in heterodimeric bispecific antibodies. Protein Eng Des Sel. 30, 685-696. doi: 10.1093/protein/gzx044.

Gonaus C, Maresch D, Schropp K, Ó Conghaile P, Leech D, Gorton L, Peterbauer CK. (2017) Analysis of Agaricus meleagris pyranose dehydrogenase N-glycosylation sites and performance of partially non-glycosylated enzymes. Enzyme Microb Technol. 2017 Apr; 99:57-66. doi: 10.1016/j.enzmictec. 2017.01.008.

Mócsai RT, Maczó A,Grünwald-Gruber C, Majer-Baranyi K, Adányi N, Milotay P, Czelecz J, Tömösközi-Farkas R. (2017) Investigation of allergen proteins in five tomato cultivars. Acta Alimentaria. 2017 Aug 08; 46(3):369-377. doi: 10.1556/066.2017.46.3.13.

Nicolussi A, Auer M, Weissensteiner J, Schütz G, Katz S, Maresch D, Hofbauer S, Bellei M, Battistuzzi G, Furtmüller PG, Obinger C. (2017) Posttranslational Modification of Heme b in a Bacterial Peroxidase: The Role of Heme to Protein Ester Bonds in Ligand Binding and Catalysis. Biochemistry. 2017 Aug 29; 56(34):4525-4538. doi: 10.1021/acs.biochem.7b00632.

Xue H, Veit C, Abas L, Tryfona T, Maresch D, Ricardi MM, Estevez JM, Strasser R, Seifert GJ. (2017) Arabidopsis thaliana FLA4 functions as a glycan-stabilized soluble factor via its carboxy-proximal Fasciclin 1 domain. Plant J. 2017 Aug; 91(4):613-630. doi: 10.1111/tpj.13591. Epub 2017 Jun 13.

Friedrich V, Janesch B, Windwarder M, Maresch D, Braun ML, Megson ZA, Vinogradov E, Goneau MF, Sharma A, Altmann F, Messner P, Schoenhofen IC, Schäffer C. (2017) Tannerella forsythia strains display different cell-surface nonulosonic acids: biosynthetic pathway characterization and first insight into biological implications. Glycobiology. Apr 1; 27(4):342-357. doi: 10.1093/glycob/cww129.

Göritzer K, Maresch D, Altmann F, Obinger C, Strasser R. (2017) Exploring site-specific N-glycosylation of HEK293 and plant-produced human IgA isotypes. J Proteome Res. 2017 16(7):2560-2570. doi: 10.1021/acs.jproteome.7b00121.

Grünwald-Gruber C, Altmann F. (2017) Letter to the Editor regarding “Analysis of recombinant human follicle-stimulating hormone by mass spectrometric approaches”. Anal Bioanal Chem. 409, 3899-3900. doi: 10.1007/s00216-017-0337-3.

Grünwald-Gruber C, Thader A, Maresch D, Dalik T, Altmann F (2017) Determination of true ratios of different N-glycan structures in electrospray ionization-mass spectrometry. Anal. Bioanal. Chem . 409(10):2519-2530 doi: 10.1007/s00216-017-0235-8.

Hennicke J, Lastin AM, Reinhart D, Grünwald-Gruber C, Altmann F, Kunert R. (2017) Glycan profile of CHO derived IgM purified by highly efficient single step affinity chromatography. Anal Biochem. 2017 Dec 15; 539:162-166. doi: 10.1016/j.ab.2017.10.020.

Marsalek L, Gruber C, Altmann F, Aleschko M, Mattanovich D, Gasser B, Puxbaum V. (2017) Disruption of genes involved in CORVET complex leads to enhanced secretion of heterologous carboxylesterase only in protease deficient Pichia pastoris. Biotechnol J. 2017 May; 12(5). doi: 10.1002/biot.201600584.

Montero-Morales L, Maresch D, Castilho A, Turupcu A, Ilieva K, Crescioli S, Karagiannis S, Lupinek C, Oostenbrink C, Altmann F, Steinkellner H. (2017) Recombinant plant-derived human IgE glycoproteomics. J Proteomics. 2017 May 24; 161:81-87. doi: 10.1016/j.jprot.2017.04.002.

Tomek MB, Janesch B, Maresch D, Windwarder M, Altmann F, Messner P, Schäffer C. (2017) A pseudaminic acid or a legionaminic acid derivative transferase is strain-specifically implicated in the general protein O-glycosylation system of the periodontal pathogen Tannerella forsythia. Glycobiology. 27(6):555-567. doi: 10.1093/glycob/cwx019.

Boehm T, Pils S, Gludovacz E, Szoelloesi H, Petroczi K, Majdic O, Quaroni A, Borth N, Valent P, Jilma B. (2017) Quantification of Human Diamine Oxidase. Clin. Biochemistry 50:7-8:444-451

Shridhar S, Klanert G, Auer N, Hernandez I, Kandula MM, Hackl M, Grillari J, Stralis-Pavese N, Kreil DP, Borth N (2017) Transcriptomic changes in CHO cells after adaptation to suspension growth in protein free medium analysed by a species specific microarray. J Biotechn 257, 13-21

Baumann M, Gludovacz E, Sealover N, Bahr S, George H, Lin N, Kayser K, Borth N (2017) Preselection of recombinant gene integration sites enabling high transcription rates in CHO cells using alternate start codons and Recombinase Mediated Cassette Exchange. Biotechn Bioeng 114:11:2616-2627

Heistinger L, Gasser B, Mattanovich D (2017) Creation of table heterothallic strains of Komagataella Phaffii enables dissection of mating gene regulation. Mol. Cell Biol 29; 38(2) e00398-17

Burgard J, Valli M, Fraf AB, Gasser B, Mattanovich D (2017) Biomarkers allow detection of nutrient limitations and respective supplementation for elimination in Pichia pastoris fed-batch cultures. Microb Cell Fact 16(1):117

Ata Ö, Prielhofer R, Gasser B, Mattanovich D, Calik P (2017) Transcriptional engineering of the glyceraldehyde-3-phosphate dehydrogenase promoter for improved deterologous protein production in Pichia pastors. Biotechn. Bioeng 114(10); 2319

Nagelreiter IM, Parvardeh M, Narzt MS, Beer L, Kremslehner C, Muresan XM, Grillari J, Zouboulis CC, Tshcachler E, Gruber F (2017) OLR1 scavenger receptor knowckdown affects mitotic gene expression but is dispensible for oxidized phospholipid-mediated stress signaling in SZ 95 sebocytes.. Mech Ageing Dev S0047-6374(17)30110-0

Garschall K, Dellago H, Galikova M, Schosserer M, Flatt T, Grillari J (2017) Ubiquituous overexpression of the DNA repair factor dPrp19 reduces DNA damage and extends Drosophila life span. NPJ Aging Mech Dis 15:3:5

Khan A, Dellago H, Terlecki-Zaniewicz L, Karbiener M, Weilner S, Hildner F, Steininger V, Gabriel C, Mück C, Jansen-Dürr P, Hacobian A, Scheideler M, Grillari-Voglauer R, Schosserer M, Grillari J (2017) SNEVhPrp18/hPso4 regulates adipogenesis of human adipose stromal cells. Stem Cell reports 8(1); 21

Song X, Narzt MS, Nagelreiter IM, Hohensinner P, Terlecki-Zaniewicz L, Zschachler E, Grillari J, Gruber F (2017) Autophagy deficient keratinocytes display increased DNA damage, senescence and aberrant lipid composition after oxidative stress in vitro and in vivo. Redox Biol 11; 219

Publications Extremophile Center

Poyntner C, Mirastschijski U, Sterflinger K, Tafer H. Melanin promotes virulence and invasiveness of Exophiala dermatitidis: transcriptome study of a CRISPR/CAS Mutant in an Ex-vivo skin model. Submitted to: Journal of Investigative dermatology.

Katja Sterflinger, Brenda Little, Guadalupe Pinar, Flavia Pinzari, Asuncion de los Rios, Ji-Dong Gu: Future directions and challenges in biodeterioration research on historic materials and cultural properties. International Biodeterioration & Biodegradation 02/2018; DOI:10.1016/j.ibiod.2017.12.007

Barbara Blasi, Hakim Tafer, Christina Kustor, Caroline Poyntner, Ksenija Lopandic, Katja Sterflinger: Genomic and transcriptomic analysis of the toluene degrading black yeast Cladophialophora immunda. Scientific Reports 12/2017; 7(1)., DOI:10.1038/s41598-017-11807-8

Donatella Tesei, Hakim Tafer, Caroline Poyntner, Guadalupe Piñar, Ksenija Lopandic, Katja Sterflinger: Draft Genome Sequences of the Black Rock Fungus Knufia petricola and Its Spontaneous Nonmelanized Mutant. Genome Announcements 11/2017; 5(44):e01242-17., DOI:10.1128/genomeA.01242-17

Livia Martinelli, Polona Zalar, Nina Gunde-Cimerman, Armando Azua-Bustos, Katja Sterflinger, Guadalupe Piñar: Aspergillus atacamensis and A. salisburgensis: two new halophilic species from hypersaline/arid habitats with a phialosimplex-like morphology. Extremophiles 05/2017; DOI:10.1007/s00792-017-0941-3

Pascal Querner, Katja Sterflinger, Dario Piombino-Mascali, Johnica J. Morrow, Reiner Pospischil, Guadalupe Piñar: Insect pests and Integrated Pest Management in the Capuchin Catacombs of Palermo, Italy. International Biodeterioration & Biodegradation 03/2017; DOI:10.1016/j.ibiod.2017.02.012

Burgard J, Valli M, Graf AB, Gasser B, Mattanovich D. (2017) Biomarkers allow detection of nutrient limitations and respective supplementation for elimination in Pichia pastoris fed-batch cultures. Microb Cell Fact. 2017 Jul 11; 16(1):117. DOI: 10.1186/s12934-017-0730-9.

Mattanovich M, Russmayer H, Scharl-Hirsch T, Puxbaum V, Burgard J, Mattanovich D, Hann S. (2017) Metabolomics of Pichia pastoris: impact of buffering conditions on the kinetics and nature of metabolite loss during quenching. FEMS Yeast Res. 2017 May 1; 17(3). DOI: 10.1093/femsyr/fox016.

Ata Ö, Prielhofer R, Gasser B, Mattanovich D, Çalık P. (2017) Transcriptional engineering of the glyceraldehyde-3-phosphate dehydrogenase promoter for improved heterologous protein production in Pichia pastoris. Biotechnol Bioeng. 2017 Oct; 114(10):2319-2327. DOI: 10.1002/bit.26363. Epub 2017 Jul 27.

Moser JW, Prielhofer R, Gerner SM, Graf AB, Wilson IB, Mattanovich D, Dragosits M. (2017) Implications of evolutionary engineering for growth and recombinant protein production in methanol-based growth media in the yeast Pichia pastoris. Microb Cell Fact. 2017 Mar 17; 16(1):49. DOI: 10.1186/s12934-017-0661-5.

O. Bixner, N. Gal, C. Zaba, A. Scheberl and E. Reimhult (2017) Fluorescent Magnetopolymersomes: A Theranostic Platform to Track Intracellular Delivery, Materials, 10, 1303. DOI: 10.3390/ma10111303

B. Shirmardi Shaghasemi, M. Mumtaz Virk and E. Reimhult (2017) Optimization of magneto-thermally controlled release kinetics by tuning of magnetoliposome composition and structure, Scientific Reports, 7, 7474, DOI: 10.1038/s41598-017-06980-9

B. Shirmardi Shaghasemi, E.S. Dehghani, E.M. Benetti and E. Reimhult, (2017) Host-guest driven ligand replacement on monodisperse inorganic nanoparticles, Nanoscale, 9, 8925 – 8929. DOI: 10.1039/C7NR02199B

A. Lassenberger, T.A. Grünewald, P.D.J. van Oostrum, H. Rennhofer, H. Amenitsch, R. Zirbs, H.C. Lichtenegger and E. Reimhult, (2017) Monodisperse iron oxide nanoparticles by thermal decomposition–elucidating particle formation by second-resolved in situ small-angle X-ray scattering Chemistry of Materials, 29, 4511-4522. DOI: 10.1021/acs.chemmater.7b01207

S. Kurzhals, B. Pretzner, E. Reimhult and R. Zirbs (2017) Thermoresponsive polypeptoid‐coated superparamagnetic iron oxide nanoparticles by surface‐initiated polymerization, Macromolecular Chemistry and Physics, 1700116, DOI: 10.1002/macp.201700116

S. Kurzhals, N. Gal, R. Zirbs and E. Reimhult, (2017) Aggregation of thermoresponsive core-shell nanoparticles: influence of particle concentration, dispersant molecular weight and graftin.g
Journal of Colloid and Interface Science, 500, 321-332 DOI: 10.1016/j.jcis.2017.04.007

S. Kurzhals, N. Gal, R. Zirbs and E. Reimhult, (2017) Controlled aggregation and cell uptake of thermoresponsive polyoxazoline-grafted superparamagnetic iron oxide nanoparticles, Nanoscale, 9, 2793-2805, DOI: 10.1039/C6NR08654C

A. Lassenberger, A. Scheberl, A. Stadlbauer, A. Stiglbauer, T. Helbich and E. Reimhult (2017) Individually stabilized, superparamagnetic nanoparticles with controlled shell and size leading to exceptional stealth properties and high relaxivities, ACS Applied Materials & Interfaces, 9, 3343–3353). DOI: 10.1021/acsami.6b12932

N. Gal, A. Lassenberger, L. Herrero-Nogareda, A. Scheberl, V. Charwat, C. Kasper and E. Reimhult (2017) Interaction of size-tailored PEGylated iron oxide nanoparticles with lipid membranes and cells, ACS Biomaterials Science & Engineering, 3, 249–259. DOI: 10.1021/acsbiomaterials.6b00311

Publications RRMC

Lichtneger, P; Sindelar, C; Schobesberger, J; Hauer, C; Habersack, H.: Experimental investigation on local shear stress and turbulence intensities over a rough bed with and without sediment using Particle Image Velocimetry, International Journal of Sediment Research (submitted).

Lichtneger, P; Sindelar, C; Habersack, H; Zeiringer, B; Lechner, C; Mayer, G; Struska, N; Albrecht, W (2017): Performance Tests and Evaluation of Hydro Power Plant with a Double Rotating Screw. WMHE 2017 – 15th International Symposium on Water Management and Hydraulic Engineering, Primosten, SEP 6-8, 2017

Klösch, M; Tritthart, M; Waygand, M; Gmeiner, P; Sindelar, C; Pfemeter, M; Egger, G; Glas, M; Busch, E; Baur, P; Haimann, M; Buchinger, M; Habersack, H (2018): Rolle der Vegetation im Hochwasserabfluss – Interaktion mit Hydrodynamik und Sedimenttransport, Österr Wasser- und Abfallwirtschaft 70: 90. https://doi.org/10.1007/s00506-017-0447-3

Schobesberger, J (2017): Untersuchungen mittels TOMO-PTV über den Bewegungsbeginn eines Steines hervorgerufen durch einen Störkörper. 19. Treffen junger WissenschaftlerInnen deutschsprachiger Wasserbauinstitute, Siegen, Germany, AUG 23-25, 2017

Schobesberger, J; Fischer, J; Sindelar, C; Habersack, H (2017): Urban sediment management – from the river to the sewer. WMHE 2017 – 15th International Symposium on Water Management and Hydraulic Engineering, Primošten, Croatia, SEP 6-8, 2017

Schobesberger, J; Lichtneger, P; Sindelar, C; Habersack, H (2017): Anwendung von 2D-PIV und Tomo-PTV zur Betrachtung des Sedimenttransportes und des Bewegungsbeginns einzelner Steine. Fachtagung “Experimentelle Strömungsmechanik”, Karlsruhe, Germany, SEP 5-7, 2017, in: Ruck, B (Hrsg); Gromke, A (Hrsg); Leder, A (Hrsg); Dopheide, D (Hrsg), Experimentelle Strömungsmechanik ; ISBN: 978-3-9816764-3-3

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